HiRIS: HIV-1 Reservoirs Integration Sites “high-rise”

Download latest datasets

These downloadable datasets are broad summaries of the full data contained within HIRIS.

Note that integration sites may be covered by multiple genes (such as those on opposite strands or read-through variants) and if so will be reported once per gene, resulting in multiple rows for a single integration site. If you want to count integration sites, you should use the integration summary without the gene annotations.

Integration summary

Download latest version as: CSV, Excel, or JSON

The latest version is from Thu Aug 29 07:00 2019 PDT.

This dataset contains the following fields:

1. environment
2. subject
3. landmark
4. location
5. orientation_in_landmark
6. multiplicity
7. source_names
8. pubmed_ids

Integration summary with annotated genes

Download latest version as: CSV, Excel, or JSON

The latest version is from Thu Aug 29 07:00 2019 PDT.

This dataset contains the following fields:

1. environment
2. subject
3. ncbi_gene_id
4. gene
5. gene_type
6. landmark
7. location
8. orientation_in_landmark
9. orientation_in_gene
10. multiplicity
11. source_names
12. pubmed_ids

Summary by gene

Download latest version as: CSV, Excel, or JSON

The latest version is from Thu Aug 29 07:00 2019 PDT.

This dataset contains the following fields:

1. environment
2. ncbi_gene_id
3. gene
4. gene_type
5. subjects
6. unique_sites
7. proliferating_sites
8. total_in_gene

Annotation files per gene

A GFF3 file is produced for each gene containing integration sites, letting you quickly focus on a specific gene of interest.

You can browse the files